Hi KeirSkunky,
Sorry for the delay - we didn't notice your post on the forums. You should put in a support ticket for questions like this as you will get a response in 5 mins.
I can't seem to find the server you are referring to but Forge does indeed work with a "MOD" folder. If its not there, it means that you are not correctly loading forge. Maybe you're still loading Vanilla? Check the control panel to see if you have activated Forge.
Once Forge is correctly activated, you'll need to start your server at least once to see the mod folder generate. Upload the mods as ZIP/JAR into this folder and restart server to activate! Easy.
You can use the online FILE EXPLORER to upload your mods or FTP.